Ad hoc Assembly

Using the full catalog of enzymes in a cloning experiment

Ad Hoc Cloning Strategies

A lineage of plasmid maps joined by arrows labelled with restriction enzymes, running from pDisplay and pEGFP-C1 at the top down to the finished construct pIN-G at the bottom
From PMID: 16524465
Predict the product

Plasmid pKQ-GFPuv was digested with BglII and Mung Bean Nuclease, purifed on a zymo column, and then digested with EcoRI. The material was run on a gel resulting in two bands. The smaller of the bands was gel purified to give fragment A. Meanwhile, plasmid pSC101 was digested with HindIII, purified, and then added to a reaction containing polymerase buffer, 0.2 mM dNTPs, and T4 DNA polymerase. After purifying the DNA on a zymo column, the material was digested with EcoRI and then subjected to gel electrophoresis. The larger of two bands was purified from the gel affording fragment B. Fragment A and fragment B were combined in a reaction with ligase buffer and T4 DNA ligase, introduced into E. coli by transformation, and spread on LB plates supplemented with Ampicillin.

The two plasmids

pKQ-GFPuv · 3208 bp pSC101 · 9263 bp

annotated sequence files — open them in a sequence editor and cut along

Ad Hoc example2

The paper PMID12732624.pdf describes construction of plasmid pGN-CYP719. What is its sequence of the NcoI/XhoI “coding fragment” described in that construction? (include the complete NcoI and XhoI sites in your answer. Helper files available for template sequences).